Sano MSc Project

Brain effective connectivity with machine learning and perturbation theory

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Brain connectivity, or the connectome, refers to the network of connections within the brain, including both structural connections between brain regions (i.e., white matter tracts) and functional connections (i.e., communication between brain regions). It has become an active area of research in clinical studies due to its potential to provide insight into various neurological and psychiatric disorders.

We are interested in effective connectivity.

Effective connectivity refers to the influence that one brain region has over another, or the causal relationships between brain regions. It is concerned with how brain regions interact and influence one another to produce specific behaviors or mental processes.

Effective connectivity can be studied using a variety of techniques, including functional magnetic resonance imaging (fMRI), electroencephalography (EEG), and magnetoencephalography (MEG). These techniques allow researchers to measure changes in brain activity over time and infer the direction of causal influence between brain regions.

Effective connectivity is an important aspect of the brain’s function, as it helps to explain how the brain’s complex network of interactions supports various mental processes and behaviors. It is a useful concept in the study of brain disorders, as abnormalities in effective connectivity may contribute to the development or maintenance of these disorders.

We are interested in studying effective with modern tools as machine learning and pertubation theory (from fMRI).

References:

Postgraduate study can be a great opportunity to gain advanced training, new skills and in-depth subject knowledge. If you’re thinking about a scientific career, you’re interested in computational medicine and are looking at various options, Sano might be the perfect place for you.  

Sano is a new nonprofit research institute dedicated to the advancement of computational medicine, developing sophisticated computer methods for the prevention, diagnosis and treatment of disease, to meet the overarching worldwide need for efficient, effective and streamlined healthcare. 

We recognize that it is all about the skills of people involved in the project, to develop Sano into the world-class research centre for advanced computational medicine. 

We’re looking for the best people around and invite all students interested in applied research within computational medicine to apply. The MSc programme at Sano is aimed at providing the next generation of healthcare technology innovators with unique skills. 

By applying, you will let us know about your interest in education at Sano. We’re looking for students to work at all our Research Groups – Healthcare Informatics, Computer Vision Data Science, Modeling and Simulation, Clinical Data Science, Personal Health Data Science and Extreme-Scale Data and Computing. 

We’re waiting for you! 

You are expected to:

  • do original research under the direction of your supervisor;
  • participate in the many seminars by internal and external speakers as well as journal clubs and group activities;
  • collaborate with students, researchers and other Sano employees. You will have the opportunity to co-learn advanced coding techniques with the help of experienced scientific programmers and data scientists.

As our successful candidate you should have:

  • undergraduate degree – BSc, BEng or other, preferably in computer science or related field;
  • interest in pursuing applied research in a multi-disciplinary environment;
  • good programming skills in Python;
  • knowledge of complex networks;
  • basic knowledge of differential ecquations;
  • excellent written and oral English communication skills.

We offer a stipend contract maximally until end of 2023 (or until graduation at the end of summer semester of 2022/2023 academic year), and expect the student to work on the project for approx. 16 hours per week (40% FTE). This includes attendance in courses, trainings and internal research meetings. The research will be conducted in close collaboration with supervisors at Sano and AGH.

The student will receive a stipend of up to 2500 PLN gross monthly for the duration of the contract.

Sano offers excellent opportunities for study and development, an access to many international conferences on computational medicine and a possibility to grow in a scientific society.

Do you have questions about this vacancy? Or do you want to know more about our organisation? Please contact us at   

Sano Centre for Computational Medicine is a new International Scientific Foundation located in Kraków, Poland. 

Sano aspires to be a major translational scientific institute, operating at the meeting point of academic science, established MedTech industry, and emerging start-up environment, combining the best of these three perspectives. 

Established with support from the European Commission and the Foundation for Polish Science, Sano aims to be a major driving force behind the advancement of computational medicine for the benefit of healthcare systems worldwide. 

Sano acts as a core technology and expertise provider for industry, and creator of innovation, developing state-of-the-art solutions for healthcare. Thanks to the substantial funding and excellent European partnership network, Sano will bring a critical mass to this transformational field of research, in order to translate scientific advancements onto clinical practice. Sano’s ambition is to become the Reference Centre for Computational Medicine in Central Europe and build a reputation as a leading center on a global level.  

As a cross-disciplinary institution, Sano uses machine learning/artificial intelligence (ML/AI), large scale computer simulations, data science, and other computational technologies towards overcoming global challenges in healthcare systems. The research agenda will be executed in close collaboration with Partners in Poland, EU and USA. 

Sano is an equal-opportunity employer. We prioritize diversity and are committed to creating an inclusive environment for everyone. We value a spirit of enquiry and perseverance, provide the space to keep asking questions, and promote a culture of curiosity and creativity. 

Do you recognize yourself in the job profile? Then we look forward to receiving your application. 

Applications in .pdf should include:

  • a cover letter with an emphasis on your research interests; 
  • a curriculum vitae; 

Apply through Sano recruitment system. If you would like to apply for future openings feel free to send your application to our database.​